Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THYM rs6499774 chr16:55756025 A/C 5.83E-5 118 6 41.78 41.77 KM Plot
THYM rs6499775 chr16:55759867 G/A 5.83E-5 118 6 41.78 41.77 KM Plot
THYM rs6507157 chr18:33631703 A/C 0.000136 119 49.4 35 51.23 KM Plot
THYM rs6509031 chr19:43357184 T/G 0.00015 117 42.9 26 28.43 KM Plot
THYM rs6509072 chr19:29331703 C/G 2.12E-5 119 43.27 42.33 27.83 KM Plot
THYM rs6543375 chr2:106730147 C/T 0.000205 119 27.68 35.77 42.9 KM Plot
THYM rs6557112 chr6:151429957 A/G 0 115 36.4 55 4.13 KM Plot
THYM rs6574406 chr14:78323044 G/A 1.23E-5 119 22.5 50.1 37.63 KM Plot
THYM rs6574408 chr14:78323375 A/G 1.23E-5 119 22.5 50.1 37.63 KM Plot
THYM rs6574409 chr14:78343258 A/G 1.23E-5 119 22.5 50.1 37.63 KM Plot
THYM rs6581162 chr12:58348380 A/G 7.46E-13 118 42.25 27.3 6 KM Plot
THYM rs6581163 chr12:58348425 C/T 7.46E-13 118 42.25 27.3 6 KM Plot
THYM rs6587203 chr17:19671458 A/G 0 119 41.77 38.83 4.13 KM Plot
THYM rs6596962 chr6:3269147 G/A 0 118 4.13 44.3 38.33 KM Plot
THYM rs6598969 chr1:26835791 C/A 0.00015 116 25.92 30.03 46.6 KM Plot